Journal of Animal Ecology
○ Wiley
Preprints posted in the last 30 days, ranked by how well they match Journal of Animal Ecology's content profile, based on 75 papers previously published here. The average preprint has a 0.06% match score for this journal, so anything above that is already an above-average fit.
Chang van Oordt, D. A.; Zimmer, C.; Taff, C. C.; Ardia, D. R.; Rose, A. P.; Aborn, D. A.; Johnson, L. S.; Ryan, T. A.; Uehling, J. J.; Vitousek, M. N.
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Immune defenses may vary across environments due to differences in life history or abiotic and biotic characteristics, but few studies have compared the strength of immune responses across broad geographical gradients. Here we investigated how bacteria killing ability (BKA), a measure of constitutive innate immune function, varies among populations of tree swallows (Tachycineta bicolor) inhabiting different environments. We hypothesized that populations living in unpredictable environments, which also have shorter breeding seasons and thus fewer opportunities to renest in the event of reproductive failure, would invest in reproduction at the expense of immunity. To test this hypothesis, we measured BKA and monitored reproductive activity in four populations located across most of the breeding range of tree swallows, in Tennessee, New York, Wyoming and Alaska. Consistent with our predictions, BKA was lowest in Alaska and Wyoming and highest in Tennessee. In most populations BKA was also lower during incubation than during nestling provisioning, and lower in males than in females. These results suggest that the high reproductive investment seen in populations experiencing more unpredictable breeding conditions may come at a cost to immune function. While reduced immune investment could increase susceptibility to parasites, this potential cost is likely offset by lower parasite pressure in these environments, limiting the need for maintaining strong constitutive innate defenses like BKA.
Easton, R.; Waller, S.; Bosley, H.; de Vries, I.; Jarvis, M. G.; Debrulle, J.; Hodgkinson-Bean, J.; Closs, G. P.; Geoghegan, J. L.
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Migration can increase population connectivity and gene flow but may also facilitate pathogen transmission among hosts and habitats. The way life-history strategies shape viral diversity in closely related freshwater fishes remains poorly understood. Here, we used metatranscriptomics to compare the viromes of two fish in the family Galaxiidae with contrasting life-history strategies: amphidromous [i]nanga (Galaxias maculatus) and river-resident Gollum galaxias (Galaxias gollumoides). We analysed 54 pooled libraries derived from 416 individuals collected across 27 sites spanning multiple catchments and fish-passage barriers in southern New Zealand. A total of 13 novel fish-associated viruses were identified from five viral families (Astroviridae, Circoviridae, Coronaviridae, Hepeviridae, and Picornaviridae). Virome composition differed markedly between species, with only a single virus-positive pool detected among [i]nanga, whereas Gollum galaxias harboured 11 novel viruses, with circoviruses dominating the virome. No fish-associated viruses were detected in post-larval juveniles of either species, and alpha diversity did not differ significantly among catchments, sites or positions relative to fish-passage barriers. However, beta diversity analyses revealed significant spatial structuring of viral communities among sites and catchments, indicating localised variation in virome composition. Contrary to our predictions, the migratory species exhibited substantially lower viral diversity than the river-resident species. The absence of detectable viruses in juveniles, combined with the greater viral richness of the longer-lived Gollum galaxias, suggests that host longevity and cumulative environmental exposure may be important drivers of virome assembly. These findings demonstrate that host life-history strategy influences virome composition and reveal unexpectedly low viral diversity in a globally widespread migratory galaxiid, providing new insights into virus-host ecology and connectivity in freshwater fishes.
Williams, K. A.; Morgan, J. E.; Lyons, S. M.
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1. Organisms rely on environmental cues, such as moonlight illumination and weather, to modulate nocturnal behaviors that reduce predation risk and conserve energy during demanding periods. Urbanization can alter the reliability of cues, potentially impairing organisms' ability to respond appropriately with consequences in increasingly urbanized landscapes. 2. We leveraged the Motus Wildlife Tracking System to identify roost initiation, roost departure and nocturnal restlessness of dark-eyed juncos (Junco hyemalis) overwintering along an urban to rural gradient to determine if activity patterns are affected by weather, moonlight illumination, and urbanization. 3. Nocturnal behavior of overwintering juncos varied with environmental factors, including moonlight illumination and temperature. However, the strength of these responses differed among sites, suggesting that natural cues of moonlight illumination were masked in urban areas, where individuals were more responsive to temperature. 4. Our results suggest that urbanization weakens birds' responsiveness to natural light cues, likely because artificial lighting reduces the visibility of moonlight; representing a key mechanism by which human-altered landscapes can disrupt nocturnal ecology in birds.
Funk, K. R.; Newediuk, L.; Brown, L. R.; Ganswindt, A.; Vander Wal, E.
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Social relationships can buffer individuals against environmental challenges, reducing the physiological costs of disturbance. Assessing how social and environmental conditions jointly shape physiological stress is critical for predicting individual responses to disturbance, particularly in managed populations. We evaluated whether social and environmental stressors act additively or whether social context modifies physiological responses to environmental challenges. We combined behavioural data and faecal glucocorticoid metabolite samples from a small, intensively monitored population of African elephants (Loxodonta africana) in a fenced reserve. Using a Bayesian framework, we tested how social factors interacted with variation in the biophysical environment, including natural environmental and anthropogenic disturbances, to predict glucocorticoid concentrations. Natural environmental variables, including weather, water availability, and season, did not predict glucocorticoid concentrations. In contrast, helicopter use, a common management intervention, was associated with higher glucocorticoid concentrations. Social effects were context dependent. Following disturbance, low-ranking individuals showed higher glucocorticoid concentrations than high-ranking individuals, whereas this pattern reversed under low-disturbance conditions. Individuals with more social connections had lower glucocorticoid concentrations, but this effect was evident only under non-disturbance conditions. Measures of betweenness centrality did not predict glucocorticoid levels. These results demonstrate that social factors mediate physiological responses to anthropogenic disturbance and that management actions can impose uneven physiological costs across individuals. Quantifying interactions between social factors and the biophysical environment may improve conservation and management strategies for social species. Integrating physiological responses to interactions between social factors and the biophysical environment can guide conservation strategies and improve management interventions in social species.
Coroller-Chouraki, S.; Savage, J.; Belisle, M.
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Agricultural intensification is a major cause of population declines in farmland birds and insects worldwide. While these declines are expected to disrupt trophic interactions through density-dependent cascading effects, examples outside of crop pest control or involving more than two trophic levels remain poorly documented. Here we quantify such cascading effects across three trophic levels involving a declining aerial insectivore, the Tree Swallow (Tachycineta bicolor), which breeding success decreases with agricultural intensity, Protocalliphora bird blowflies (Diptera: Calliphoridae) that parasitize its nestlings, and Nasonia parasitoid jewel wasps (Hymenoptera: Pteromalidae) that feed upon blowfly pupae within swallow nests. Agriculture intensity may affect each of these actors either directly via, for instance, toxicological effects from pesticide use, or indirectly through density-dependent trophic interactions, which can exacerbate or mitigate one another. Using Bayesian models within a causal inference framework, we quantified how nestling host density, meteorological conditions, and agricultural landscape context affect Nasonia parasitoid infestation of Protocalliphora pupae, and estimated Protocalliphora emergence success. Analyses were based on 3,340 Protocalliphora puparia collected from 248 Tree Swallow nests over a 16-year period (2004-2019) across a 10,200-km2 agricultural intensity gradient in Southern Quebec, Canada. Model predictions indicated that Protocalliphora emergence probability increased steeply with nestling host availability (i.e., nestling-days). Whereas Nasonia parasitoid infestation occurrence at the nest level increased with Protocalliphora host availability, the proportion of infested Protocalliphora pupae within nest decreased and led to a dilution effect at the individual level. Although Protocalliphora abundance within nests decreased with agricultural intensity, their emergence probability peaked in agrointensive landscapes. This increase was associated with reduced Nasonia infestation rates, suggesting that agricultural intensity indirectly mitigated parasitoid pressure on Protocalliphora host populations. Our results highlight how agricultural intensification can shape multitrophic interactions and life-history traits (emergence success and infestation rates) by simultaneously reducing host availability and weakening top-down control by parasitoids.
Paplauskas, S.
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Forecasting infectious disease dynamics is important for ecological management and emerging disease preparedness, yet many systems lack the long-term datasets required to develop reliable predictions. Spatial replication may provide an alternative by allowing information to be shared among populations, but the extent to which this improves forecasting remains unclear. Here, I used epidemic and temperature data from 20 replicated semi-natural Daphnia-parasite pond populations monitored across four seasons (80 epidemics) to test whether information from multiple populations improves forecasts and whether environmental similarity identifies informative populations. I forecasted disease prevalence, infected host density, and healthy host density using a benchmark model, autoregressive integrated moving average (ARIMA), and time-series regression models. Models were trained using focal-population data alone, mean dynamics across other populations, or temperature-weighted mean dynamics from environmentally similar populations. Epidemics showed strong seasonal structure, with prevalence and infected host density generally peaking during the warmest period of the season. However, no forecasting approach consistently outperformed others across all variables. Temperature improved forecasts of prevalence and infected host density but not healthy host density. Multi-population training improved forecasts in some cases, particularly for ARIMA models, whereas temperature-weighted averaging provided no additional benefit over simple averaging. Regression models consistently produced the most accurate forecasts of healthy host density. These results show that borrowing information among populations can improve forecasts under specific conditions but is not universally beneficial, highlighting the importance of matching forecasting approaches and data sources to the ecological processes being predicted.
George, V.; Cam, E.; Reid, J. M.; Acker, P.
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Quantifying how individuals adjust the seasonal timings of life-history events (i.e. their phenology) in response to seasonal environmental conditions is fundamental to predicting impacts of changing seasonality. However, the current standard approach of inferring phenological responses by directly analysing observed event dates relies on foundational assumptions that could be invalidated by changing seasonality, and excludes individuals that do not express focal events, potentially generating misleading inferences. To overcome these limitations, we devised a Phenological Threshold Model (PTM) that conceptualizes phenological events as switches between discrete life-history states and primarily estimates variation in underlying latent dynamic responses to seasonal progression, from which event dates secondarily arise. We demonstrate that the PTM can accurately retrieve simulated parameter values, including given incomplete seasonal field observations. Application to multi-year data on annual breeding in black-legged kittiwakes (Rissa tridactyla) demonstrated substantial among-individual variation in latent responses to seasonally varying environmental drivers, and associated daily probabilities that individuals will initiate breeding, revealing how annual distributions of breeding dates and proportions of non-breeders jointly arise. We thereby formalise a new conceptual and statistical framework for quantifying the potential for, and constraints on, rapid plastic and micro-evolutionary changes in phenology in changing seasonal climatic and environmental regimes.
Coroller-Chouraki, S.; Savage, J.; Belisle, M.
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Morphological variation in insects can indicate responses to habitat change and land use intensification, with potential consequences for trophic interactions. In insect host-parasitoid systems, host body is often a key determinant of offspring development and emergence success, as well as parasitoid host-selection behavior. Yet, most studies in agricultural landscapes have focused on size variation in crop-associated insects (i.e.: pests, pollinators and enemies), leaving those relying on non-crop resources largely unexplored. Here, we investigated how agroenvironmental contexts and trophic resource availability influence puparial size in Protocalliphora sialia (Diptera: Calliphoridae), an obligate hematophagous ectoparasite of Tree Swallow (Tachycineta bicolor) nestlings. We further tested whether puparial size affects emergence probability and risk of parasitoidism by Nasonia spp. (Hymenoptera: Pteromalidae) jewel wasps. Using 1,513 P. sialia puparia from 88 nests within a nest-box monitoring system spanning a 10,200-km^2 east-west intensification gradient in southern Quebec, Canada, we evaluated how agrointensive contexts, avian host availability, and ectoparasite densities influence puparial size, parasitoidism risk, and emergence success. The agricultural context appears to shape puparial size through survival biases and/or altered growth rates. In agroextensive contexts (i.e.: pastures, forages with high tree cover), where Protocalliphora are more numerous, P. sialia puparia were smaller and exhibited greater size variation. Conversely, in agrointensive environments (maize and soybeans monocultures with higher doses of pesticides), where Protocalliphora are fewer, small individuals were underrepresented, suggesting a selective mortality in P. sialia population. However, puparial size explained less than 10% of the variation in emergence or parasitism, likely reflecting consistently high parasitic pressure from Nasonia wasps, which infested 50-90% of puparia, depending on site and year. Our findings highlight the importance of selective mortality in structuring trait distributions and modulating multi-trophic interactions in human-modified landscapes.
Ramesh, A.; Stamhuis, E.; Nicolaus, M.
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Schooling is a widespread behaviour among pelagic fish that reduces locomotion costs of migration and predation risk. It is characterised by coordinated movements, speed and orientation of group members. Although schooling can vary both between populations and among individuals of the same population, these levels of variation are seldom considered together. Here, we investigated whether schooling tendencies in three-spined sticklebacks (Gasterosteus aculeatus) vary between populations and among individuals within-populations depending on their phenotype. We first compared the schooling behaviour of anadromous (migrants) and recently landlocked (residents) populations and tested whether individual sociability explained within-population variation in schooling. We then studied whether schooling behaviour is modulated when migrants and residents are in mixed groups. Migrant groups displayed better schooling performance than residents with higher alignment. Within migrant groups, less social individuals displayed more leadership, were better aligned, swam closer to others and fatigued less than more social fish. These patterns were absent in residents. When the two populations were mixed, overall schooling performance declined, particularly in migrants, with schools exhibiting reduced compaction and alignment, resembling resident groups. Thus, individuals did not modulate their schooling behaviour to the group social composition and phenotype-dependent schooling patterns were disrupted in migrants when mixed. These findings suggest that migration-related behaviours can disappear quickly post-isolation. They also highlight the importance of individual sociability in self-organisation and shaping collective behaviour, especially in populations that retain migratory behaviour. Considering behavioural variation across multiple hierarchical levels is thus key to understanding complex social systems.
Coroller-Chouraki, S.; Savage, J.; Pelletier, F.; Garant, D.; Belisle, M.
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Feathers incorporated into bird nests are thought to provide multiple benefits, including thermal insulation and protection against nest-dwelling ectoparasites. For instance, in Swallows, it has been suggested that feathers influence infestations by Protocalliphora blow flies either by acting as a physical barrier between larvae and nestlings or through chemical compounds associated with preen oil. However, empirical evidence for an antiparasitic effect of feathers remains equivocal. Using 1,100 naturally infested Tree Swallow (Tachycineta bicolor) nests collected from a nest-box study system monitored in southern Quebec, Canada, between 2004 and 2018, we tested whether nest mass and feather abundance influenced hematophagous ectoparasites (Protocalliphora spp.) loads. We further assessed whether feather abundance directly affected body size using measurements of 1,513 P. sialia puparia, and emergence success using data from 961 Protocalliphora spp. puparia. Nest mass was positively associated with feather abundance, and both variables showed very weak positive relationships with parasite abundance. Feather abundance was unrelated to puparium size nor parasite emergence success. Our results provide no support for an anti-parasitic effect of feather lining within Tree Swallow nests. Using one of the largest datasets assembled to date on feather-lined nests and avian blow flies, we found no evidence that feather abundance impairs Protocalliphora density, development or emergence success. However, our findings do not preclude potential effects of feathers on other ectoparasites or microorganisms with different life histories. Future studies simultaneously monitoring multiple parasite taxa (such as fleas, mites, or bacteria) may therefore be needed to fully evaluate the ecological consequences of feather lining within avian nests.
Walmsley, S. F.; Girard, C.; Newton, K.; Gaspard, D.; Whitehead, H.; Feyrer, L.
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Social relationships are strongly linked to health and biological fitness in humans and other animals. For example, social support may buffer individuals against harsh ecological conditions. Reciprocally, better health may allow for greater investment in social relationships. We examined links between health and social behaviour in an endangered population of northern bottlenose whales (Hyperoodon ampullatus). Using photo-identifications spanning 37 years, we visually classified whether individuals had poor body condition on each day they were observed (N = 3,086 whale-days). We then used generalized linear mixed models to explore how body condition varied with sex, age, and within-individual deviations in group size or other social metrics derived from Bayesian social networks. Approximately 11% of individuals were classified as being in poor condition at any time, though the prevalence of poor condition varied across raters and years. Visually assessed condition was successfully validated with morphometric measures, though there was only weak evidence that poor condition predicted apparent survival. Contrary to expectations, whales in poor condition were found in larger groups and had more social partners than their average across the study period. These findings run counter to the expectation that health and social connectedness are positively correlated in social mammals.
Shimadzu, H.; Day Dell Olio, I.; Barbosa, M.
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1. Temperature shapes life histories through its effects on energy allocation among growth, reproduction and maintenance. The resulting temperature dependence of performance is commonly characterised using thermal performance curves (TPCs), which are often treated as static descriptions that apply uniformly throughout life. Yet the response to thermal variability may change across ontogeny. 2. We recorded growth, reproduction and survival throughout the lifetimes of individual Daphnia magna under four thermal regimes: Constant Low (15C), Constant Rearing (20C), Constant High (25C) and Variable (15C to 25C). The mean temperature under Variable closely matched that under Constant Rearing. Using an allometric energy-allocation model, we derived age specific and lifetime performance measures and quantified their uncertainty with a stratified individual-level bootstrap. Our principal quantity was the Jensen contrast, defined as performance under Variable minus that under Constant Rearing. 3. Age specific point estimates of the Jensen contrast changed sign across ontogeny. A positive aggregate contrast in full trajectory growth concealed a negative mid-life contrast; reproductive point estimates were positive during early and mid life but negative later. Bootstrap support was strong for the positive early life and negative mid-life growth contrasts, and for the positive early life reproductive contrast. Under a second-order approximation, this pattern of estimated signs is consistent with ontogenetic changes in effective thermal curvature. 4. The positive early life reproductive response did not carry through to the lifetime outcome: expected lifetime reproduction was lower under Variable than under Constant Rearing, with strong bootstrap support for the negative lifetime contrast. Because lifetime reproduction is survival weighted, lower survival under Variable reduced later reproductive contributions; across the estimated trajectories, the accumulated negative late life contribution out-weighed the earlier positive contributions. 5. These results show why forecasts based on mean temperature, a single life stage or an aggregate TPC may misrepresent lifetime performance under variable thermal regimes. Accounting for both ontogeny and temperature variability may therefore improve forecasts of life-history performance in increasingly variable thermal environments.
Newediuk, L.; Melvin, Z.; Thomas, L.; Vander Wal, E.
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1. Group foraging reduces the risks associated with foraging: larger groups dilute individual predation risk, allow group members to share the costs of vigilance, and provide a social structure for exchanging information about predators. The benefits of shared social information over simple safety in numbers should depend on the relationships among group members. Consequently, group composition should affect the selection of risky and safe habitats in social species. 2. We asked whether relationships among elk (Cervus canadensis) group members moving together influence their selection of risky habitats more than grouping alone. We tested three hypotheses. The familiarity hypothesis predicts that elk with close social ties are most likely to select risky habitats together. The inclusive fitness hypothesis predicts that the closest genetic relatives are most likely to select risky habitats together. The dilution hypothesis predicts that familiarity and genetic relationships do not influence habitat selection, with all group foraging benefits derived from proximity to others. 3. We used integrated Step Selection Analysis to test whether the identity of the closest group members influenced habitat selection. We tested whether the relationship of the nearest elk--either genetic or social--incentivized selection of risky habitat more than proximity to the nearest elk. 4. Group foraging clearly reduced risk, with elk more likely to select risky habitat when near others. Elk were also more likely to select risky habitats when near closer relatives, albeit with considerable variation among individuals. However, familiarity had a large and consistent effect: elk were far more likely to select risky habitats when near socially familiar group members. 5. Our results suggest that information shared within foraging groups, especially between socially familiar individuals, may lower the risks associated with habitat selection. Similarly, the benefits of reliable social information for reducing risk likely incentivizes the formation of stronger social ties within foraging groups. This positive feedback between social familiarity and habitat selection could thereby increase access to profitable habitats that are otherwise too risky, cementing what we term the social information landscape as a key driver of movement and habitat selection.
Distiller, G.; Durbach, I.
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Recent work on the design of spatial capture-recapture (SCR) studies has largely focused on settings with a single set of movement and detection parameters. In many applied contexts, however, populations are naturally stratified-for example, when different sexes exhibit markedly different movement scales and encounter processes, or when more than one focal species is monitored. Designs that perform well for one group may be inefficient or suboptimal for others, despite the substantial logistical effort typically required to implement an SCR survey. We describe several potential SCR design strategies for surveying multiple groups, and compare these using simulation. Designs considered include regular and optimised grids, clustered and lacework designs, and designs generated using genetic algorithms, including new approaches that optimise information from both groups and a recently published two-stage design. Using proximity detectors such as camera traps, we evaluate design performance in terms of precision, bias, and coverage, and examine how performance changes with the number of available resources. Our results show that multi-group SCR surveys can perform well even when focal groups differ greatly in movement scale and encounter rate, provided that some simple guidelines are followed. Systematic layouts accommodating more than one characteristic spacing e.g. cluster designs, performed consistently well and are a reliable default option. Regular grid designs with a single spacing between detectors are feasible when differences between groups are moderate but performed poorly as differences increased. Establishing when these designs become problematic adds unnecessary risk to the design process. Algorithmic designs did not outperform systematic designs even in highly-skewed scenarios expected to favour them. In practice, when there is more than one focal group we recommend identifying the smallest and largest plausible movement scales and rejecting potentially pathological designs, primarily those that cannot generate recaptures at the smaller scale or cover a substantial area at the larger scale.
Cremel, K.; Festa-Bianchet, M.; Langlois, A.; Pelletier, F.
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Heavy snowpack can be a severe constraint for alpine herbivores, yet adult survival in long-lived temperate ungulates is typically canalized against environmental variation. Using a 45-year individual-based dataset on bighorn sheep (Ovis canadensis) and historical snow reconstructions at Ram Mountain, Canada, we evaluated the direct and indirect effects of snow conditions on age- and sex-specific survival. For both sexes, survival of lambs and senescent individuals decreased with increasing average snow depth, whereas non-senescent adults (aged [≥] 1 year and < 8 years) showed high survival under mean conditions. However, this resilience broke down once specific thresholds of snow depth were crossed, with sharp survival declines beyond 90 cm of snow depth for females and 100 cm for males. Lamb survival, already reduced by increasing average snow depth, declined further once snow depth exceeded 90 cm. Crucially, the annual probability of snow depth exceeding 90 cm increased markedly over the study period, along with a density-independent temporal decline in survival across all demographic groups. Lamb survival declined by 0.37, and adult female survival, the most critical vital rate for population growth, dropped by 0.13 over the study period. Our findings challenge the established paradigm of demographic buffering in prime-aged adults, demonstrating that their resilience to environmental variability is fundamentally non-linear and breaks down once a changing climate regime breaches adult physiological boundaries, severely compromising population viability.
Carroll, D.; Stukonyte, L.; Harding, K. C.; Surviliene, V.; Jussi, M.
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In Baltic grey seals (Halichoerus grypus), interannual variation in sea-ice availability can alter the proportion of females breeding on land, generating substantial variation in local breeding density among years. We investigated preweaning survival, post-weaning residence, and weaning body condition at a Baltic grey seal land-breeding colony over two years with contrasting colony densities. Drone imagery provided repeated counts of pups in distinct developmental stages and estimates of moulting pup mass as an index of weaning body condition. A Bayesian state-space population model estimated substantially greater pup production in the high- (282.5 [95% CrI = 252.8 to 320.9] pups) than the low-density (188.3 [95% CrI =168.9 to 210.8] pups) year, but similar preweaning survival (0.66 [95% CrI = 0.53 to 0.81] and 0.67 [95% CrI = 0.56 to 0.79], respectively). In contrast, post-weaning residence differed substantially between the high- (11.8 [95% CrI = 9.2 to 15.7] days) and low-density (30.3 [95% CrI = 23.1 to 39.1] days) years. Greater exposure to other pups during early life was associated with lower weaning body mass ({beta} = -0.45 [-0.89 to -0.01], P[{beta} < 0] = 0.98). Together, these results suggest that the consequences of higher breeding density may emerge through poorer weaning condition and altered post-weaning residence even when effects on preweaning survival are not detectable.
Kishi, S.
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1. Detecting causal relationships from ecological time series remains challenging because community dynamics are often nonlinear, high-dimensional, noisy, and strongly synchronized. These characteristics can reduce the reliability of existing causal inference methods and complicate the identification of ecological interactions in complex natural systems. 2. I introduce Forest-weighted Causal Correlation (FORCC), a machine-learning-based framework that infers directional causality from adaptive neighborhood structures learned by random forests. Rather than evaluating causal direction through cross-map reconstruction, FORCC quantifies directional dependence from the preservation of neighborhood structure using rank-based associations among forest-weight matrices. 3. Simulations of coupled nonlinear systems showed that FORCC accurately recovered causal direction while substantially reducing synchronization-induced false-positive detections relative to conventional convergent cross mapping. Chatterjee's {xi} exhibited the strongest resistance to synchronization-induced errors among the evaluated rank-based statistics. 4. Application to a 12-year marine community time series from Maizuru Bay, Japan, identified asymmetric relationships between individual taxa and community dynamics, revealing candidate driver-like and passenger-like roles that were not readily explained by seasonal synchrony alone. 5. By combining adaptive neighborhood learning with rank-based causal inference, FORCC provides a scalable framework for causal discovery in ecological time series. The method offers a practical tool for screening causal relationships, generating ecological hypotheses, and investigating complex interactions in multivariate natural systems.
Chang van Oordt, D. A.; Taff, C. C.; Ardia, D. R.; Shipley, J. R.; Vitousek, M. N.
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Developing in suboptimal temperatures can have widespread negative effects in organisms, but early exposure to thermal challenges can also trigger increased investment in thermoregulatory capacity. Within birds, the effects of cold exposure during incubation may differ between precocial and altricial species due to differences in the ontogeny of thermoregulation. To date, most of the evidence showing that embryonic cold exposure shapes future thermoregulatory capacity comes from a few precocial species in laboratory settings. Less is known about sensitivity to low-temperature incubation in altricial species which only become fully endothermic after hatching. In this study, we tested the effects of cold temperatures during embryonic development by temporarily cooling the nest boxes of free-living tree swallows (Tachycineta bicolor) during late incubation and subsequently exposing nestlings to an acute cold challenge. Cold exposure during early development made nestlings better at maintaining their body temperatures during the acute challenge. Developmentally cold-exposed birds also had higher thyroxine (T4) levels when sampled at lower ambient temperatures, whereas control birds showed the opposite relationship. Among nestlings that failed to maintain their body temperature during the acute cold challenge, developmentally cold-exposed nestlings secreted more corticosterone during the acute cold challenge than control nestlings. Despite these changes, cold-exposed birds did not differ from controls in cold-induced metabolic rates, body mass, or bacteria killing ability. These results are, to our knowledge, the first to show that developmental cold exposure increases the capacity to maintain body temperature during future cold challenges in a songbird. These findings suggest that experiencing even a mild decline in ambient temperatures during embryonic development could prime birds to cope more effectively with harsh or variable environmental conditions later in life.
Touzalin, F.; Wasniewski, M.; Picard-Meyer, E.; Farcy, O.; Le Bris, Y.; Le Houedec, A.; Le Floch, C.; Griffiths, M. E.; Puechmaille, S. J.; Teeling, E. C.; Morales, J. M.; Viana, M.; Streicker, D. G.
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Understanding the transmission and persistence of zoonoses in wild reservoirs is crucial for outbreak prevention, demographic assessment, and conservation planning. Host demography, ecology, behaviour and within-host viral kinetics together underpin transmission dynamics but are rarely united within epidemiological models. Here we characterised the transmission dynamics of European bat lyssavirus 2 (EBLV-2) infection dynamics by uniting a long-term study (2010-2018) of the ecology of five greater mouse-eared bat (Myotis myotis) colonies in France (~2700 marked individuals) with diagnostic evidence of virus circulation. Although no lyssavirus was detected in any of the 442 saliva samples tested, seropositivity showed synchronised peaks across colonies (0-100% annually), with the highest seroprevalence in 2015-2017, but remaining low otherwise. Fitting Bayesian compartmental epidemiological models, we found evidence that shifts in EBLV-2 prevalence were primarily driven by the gregarious behaviour of populations during the mating season and age-dependent variation in transmission. The duration of maternal immunity emerged as a key, and still empirically unknown factor, which shaped whether EBLV-2 maintenance was enzootic or required an external force of infection. Lyssavirus outbreaks in M. myotis were associated with few deaths overall and had a negligible impact on population dynamics. These findings underscore the value of integrating ecological and individual-level data with mechanistic modelling to enhance our understanding and management of zoonotic pathogens in wildlife.
Satarkar, D.; Lopez-Idiaquez, D.; Bliard, L.; Sepil, I.; Sheldon, B. C.
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Early-life phenotypes frequently predict adult phenotypes through developmental 'silver-spoon' carry-over effects, but how strongly and under what circumstances? Using 40 years of individual-based data from a great tit (Parus major) population, we used covariance reaction norms to understand how the natal-to-adult body mass association shifts across temperature, rainfall, and population density gradients during both life stages. We show that the natal-adult mass correlation is substantial (r {approx} 0.7) but strongly environment-dependent. Reaction norm shapes across climatic and density axes point to distinct mechanisms, including compensatory growth under benign adult conditions and density-dependent modulation of early-life differences. We further show that the conditions experienced in adulthood largely drive these patterns and determine whether early-life advantages are retained, even when explicitly tested within an environmental-matching paradigm. Decomposing the correlation using 38 generations of pedigree data revealed no evidence of gene-by-environment interactions. Instead, the observed phenotypic correlation reaction norms could be attributed almost entirely to environmentally-sensitive non-genetic individual differences. Overall, our findings show that climatic and demographic shifts can substantially reshape developmental carry-over without altering the genetic architecture tying body mass across life stages, with implications for how reliably early-life mass can predict individual quality and adult traits in wild animal populations.